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Boutillier, P., Maasha, M., Li, X., Medina-Abarca, H. F., Krivine, J., Feret, J., … Fontana, W. (2018). The Kappa platform for rule-based modeling. Bioinformatics, 34(13), i583–i592. https://doi.org/10/gdrhw6
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Wilkinson, D. J. (2006). Stochastic Modelling for Systems Biology. CRC Press.
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Fages, F., Martinez, T., Rosenblueth, D. A., & Soliman, S. (2018). Influence Networks Compared with Reaction Networks: Semantics, Expressivity and Attractors. IEEE/ACM Trans. Comput. Biol. Bioinformatics, 15(4), 1138–1151. https://doi.org/10/ggdf94
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Fages, F., Calzone, L., & Soliman, S. (2006). BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge. Bioinformatics, 22(14), 1805–1807. https://doi.org/10/dfv
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