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Tuyéras, R. (2018). Category theory for genetics I: mutations and sequence alignments. ArXiv:1805.07002 [Math]. Retrieved from http://arxiv.org/abs/1805.07002
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Tuyéras, R. (2018). Category theory for genetics II: genotype, phenotype and haplotype. ArXiv:1805.07004 [Math]. Retrieved from http://arxiv.org/abs/1805.07004
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Boutillier, P., Maasha, M., Li, X., Medina-Abarca, H. F., Krivine, J., Feret, J., … Fontana, W. (2018). The Kappa platform for rule-based modeling. Bioinformatics, 34(13), i583–i592. https://doi.org/10/gdrhw6
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Fages, F., Martinez, T., Rosenblueth, D. A., & Soliman, S. (2018). Influence Networks Compared with Reaction Networks: Semantics, Expressivity and Attractors. IEEE/ACM Trans. Comput. Biol. Bioinformatics, 15(4), 1138–1151. https://doi.org/10/ggdf94
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Tuyéras, R. (2018). Category Theory for Genetics. ArXiv:1708.05255 [Math]. Retrieved from http://arxiv.org/abs/1708.05255
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Ehresmann, A. C., & Gomez-Ramirez, J. (2015). Conciliating neuroscience and phenomenology via category theory. Progress in Biophysics and Molecular Biology, 119(3), 347–359. https://doi.org/10/f75jzr
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Brown, R., & Porter, T. (2008). Category Theory and Higher Dimensional Algebra: potential descriptive tools in neuroscience. ArXiv:Math/0306223. Retrieved from http://arxiv.org/abs/math/0306223
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Engeler, E. (2008). Neural Algebra and Consciousness: A Theory of Structural Functionality in Neural Nets. In K. Horimoto, G. Regensburger, M. Rosenkranz, & H. Yoshida (Eds.), Algebraic Biology (Vol. 5147, pp. 96–109). Berlin, Heidelberg: Springer Berlin Heidelberg. https://doi.org/10.1007/978-3-540-85101-1_8
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Fages, F., Calzone, L., & Soliman, S. (2006). BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge. Bioinformatics, 22(14), 1805–1807. https://doi.org/10/dfv
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Mazzola, G. (2002). The Topos of Music: Geometric Logic of Concepts, Theory, and Performance. Birkhäuser Basel. https://doi.org/10.1007/978-3-0348-8141-8
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Healy, M. J. (2000). Category theory applied to neural modeling and graphical representations. In Proceedings of the IEEE-INNS-ENNS International Joint Conference on Neural Networks. IJCNN 2000. Neural Computing: New Challenges and Perspectives for the New Millennium (pp. 35–40 vol.3). Como, Italy: IEEE. https://doi.org/10/dr29pc
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Baas, N. A., & Emmeche, C. (1997). On Emergence and Explanation. Intellectica. Revue de l’Association Pour La Recherche Cognitive, 25(2), 67–83. https://doi.org/10/ggdf9z
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Rosen, R. (1958). The representation of biological systems from the standpoint of the theory of categories. The Bulletin of Mathematical Biophysics, 20(4), 317–341. https://doi.org/10/fdgzxz
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